biomphalaria glabrata genome


2018 Oct 29;11(1):566. doi: 10.1186/s13071-018-3135-7. 2014;44:343–353. 2017 May 16;11(5):e0005246. The biology of Biomphalaria glabrata comprises many aspects that make this organism a logical choice for a molluscan genome project. The RefSeq genome records for Biomphalaria glabrata were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. National Center for Biotechnology Information, Unable to load your collection due to an error, Unable to load your delegates due to an error, Average read depth coverage (RDC) for the Bge3 cell line genome mapped to the 18 largest. Molecular karyotyping of Bge3 cell line with read depth coverage and single-nucleotide variant allele frequency. snails are maintained as inbred lines at several research groups. Int J Parasitol. Current treatment and prevention strategies have not led to a significant decrease in disease transmission. Molecular studies of Biomphalaria glabrata, an intermediate host of Schistosoma mansoni. The genome size of the zebra mussel (Dreissena polymorpha), a prolific invader of North American lakes, was estimated to be 1C = 1.70 ± 0.03 pg, and that of the freshwater snail Biomphalaria glabrata, the predominant intermediate vector of the human parasite Schistosoma mansoni, was estimated at 0.95 ± 0.01 pg. These snails can survive in aestivation for a few months when removed from their freshwater habitat or when the habitat dries out. Parasitic Influences on the Host Genome Using the Molluscan Model Organism Biomphalaria glabrata. Additionally, this resource will aid in the development of new technologies and molecular approaches that promise to reveal more about this schistosomiasis-transmitting snail vector. The Biomphalaria glabrata DNA methylation machinery displays spatial tissue expression, is differentially active in distinct snail populations and is modulated by interactions with Schistosoma mansoni. doi: 10.2307/3273814. Int J Parasitol. Annotation of genome-wide single-nucleotide variants (SNVs) and analysis for Gene Ontology (GO) term enrichment. Clipboard, Search History, and several other advanced features are temporarily unavailable. We also resolved representative karyotypes for the Bge3 subculture, which revealed a mixed population exhibiting substantial aneuploidy, in line with previous reports from other Bge subcultures. The aquatic pulmonate snail Biomphalaria glabrata is a significant vector and laboratory host for the parasitic flatworm Schistosoma mansoni, an etiological agent for the neglected tropical disease schistosomiasis. -. Antilles, Africa, Madagascar and the Arabian peninsula. This is an international affiliation of some 40 researchers from all five continents of the world, that have expressed interest in genome-type analysis of B. glabrata (letters available on request, * indicates willingness to Here, we report the genome sequence of our laboratory subculture of the Bge cell line (designated Bge3), which we mapped to the B. glabrata BB02 reference genome. Biomphalaria glabrata inhabits small streams, ponds [27] and marshes. The Biomphalaria glabrata data and its display on Ensembl Genomes are made possible through a joint effort by the Ensembl Genomes group and VectorBase, a component of VEuPathDB. Biomphalaria glabrata ([47], image Fig. The recent publication of the genome of the snail Biomphalaria glabrata (Adema et al., 2017), added a much-needed level of overarching genetic resources that have, and will continue to improve our understanding of the mechanistic basis of gastropod immunity by building further on the knowledge generated by previous studies. Short sequence variants. Parasite eggs Patently infected B. glabrata snails shed and seed their aquatic See this image and copyright information in PMC. Sequence and structural variation in the genome of the Biomphalaria glabrata embryonic (Bge) cell line doi: 10.1371/journal.pntd.0007833. The complete mitochondrial (Mt) genome of the gastropod Biomphalaria glabrata, a major intermediate host for the human parasite Schistosoma mansoni, was sequenced.The circular genome, the first determined from a basommatophoran snail, is AT rich (74.6%) and the smallest Mt genome (13,670 nucleotides [nt]) characterized from mollusks to date. 2000 Apr 10;30(4):535-41. doi: 10.1016/s0020-7519(99)00182-4.  |  host, schistosome parasites mature and reproduce sexually. Horizonte, district of Barreiro. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment … BGLB003659 or LG17_random_Scaffold378:255702-312404 or U6. Below, such aspects are highlighted from the standpoints of basic science and of infectious disease (~2001). A website detailing efforts of the B. glabrata genome initiative is available (http://biology.unm.edu/biomphalaria-genome/index.html). The Biomphalaria glabrata genome The most extensively studied snail intermediate host for schistosomes is B. glabrata because it is the species that is most closely associated with schistosomiasis in the western hemisphere and it is the easiest to maintain in the laboratory. Its 916 Mb genome has recently been sequenced and annotated, but it remains poorly assembled. Scientific classification Kingdom: Animalia Phylum: Mollusca Class: Gastropoda: clade Heterobranchia clade Euthyneura clade Panpulmonata clade Hygrophila Superfamily: Planorboidea Family: Planorbidae Subfamily: Planorbinae Tribe: Biomphalariini Genus: Biomphalaria Species: B. glabrata Binomial name Biomphalaria glabrata Synonyms Planorbis glabratus Say, 1818 Australorbis glabratus Taphius glabratus Planorbis guadaloup… flatworm parasites of the genus Schistosoma, causative pathogens of University, St Louis MO. 2012;13:30. pmid:23151271. Int J Parasitol. 17. Genomic analysis of the fresh water mollusc Biomphalaria glabrata to understand host: Parasite interactions . -, Larson MK, Bender RC, Bayne CJ. Genomic DNA was extracted from whole body soft tissues minus the infect B. glabrata for completion of the S. mansoni life cycle. Knight M, Ittiprasert W, Odoemelam EC, Adema CM, Miller A, Raghavan N, et al. Homologues, gene trees, and whole genome alignments across multiple species. Linkage maps are being composed using microsatellite markers, in anticipation of having actual genes and BACs toward physical mapping. Resistance of Biomphalaria glabrata 13-16-R1 snails to Schistosoma mansoni PR1 is a function of haemocyte abundance and constitutive levels of specific transcripts in haemocytes. The Biomphalaria glabrata genome The most extensively studied snail intermediate host for schistosomes is B. glabrata because it isthe species that is most closely associated with schistosomiasis in the western hemisphere and it is the easiest to maintain in the laboratory. 1980;10:21–25. Foster HA, Griffin DK, Bridger JM. Much is known regarding the host-parasite interactions of these two organisms, and the B. glabrata embryonic (Bge) cell line has been an invaluable resource in these studies. genome of the snail Biomphalaria glabrata (Adema et al., 2017), added a. much-needed level of overarching genetic resources that have, and will. Knight M, Ittiprasert W, Arican-Goktas HD, Bridger JM. mansoni that is infective for humans. Tandem arrays of complete or partial AIGs were found on 12 scaffolds (Fig.  |  [28] For example, the snail lives in banana plantation drains in Saint Lucia. library is available for this strain from the Arizona Genomics Institute The significance of B. glabrata in the transmission of schistosomiasis is such that it has been selected for complete genome sequencing. 5-methyl-cytosine and 5-hydroxy-methyl-cytosine in the genome of Biomphalaria glabrata, a snail intermediate host of Schistosoma mansoni Sara Fneich1,2 Email: sara.fneich@etudiant.univ-perp.fr Nolwenn Dheilly1,2 Email: nolwenn.dheilly@univ-perp.fr Coen Adema4 Email: coenadem@unm.edu Anne Rognon1,2 Email: rognon@univ-perp.fr Michael Reichelt3 Email: reichelt@ice.mpg.de Jan Bulla5 Email: … Parasite 2020 Oct 13;13(1):511. doi: 10.1186/s13071-020-04384-9. © EMBL-EBI environment with numerous free-swimming cercariae, the stage of S. Int J Parasitol. Int J Parasitol. Biomphalaria glabrata. J Parasitol. Evidence: RefSeq; DBLINKS: KEGG BRITE: NC_032840. Biomphalaria glabrata An albino individual of Biomphalaria glabrata. Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Diminished adherence of Biomphalaria glabrata embryonic cell line to sporocysts of Schistosoma mansoni following programmed knockout of the allograft inflammatory factor. 1955;41:526–528. Abstract The aquatic planorbid snail Biomphalaria glabrata is one of the most intensively-studied mollusks due to its role in the transmission of schistosomiasis. The authors declare that they have no competing interests. Would you like email updates of new search results? The AIG footprints are located on 66 different scaffolds (Additional file 1: Fig. Because resistance to infection in adult snails is … Ensembl Metazoa release 49 - November 2020 A proposal for sequencing the snail genome was submitted to the National Human Genome Research Institute, and Biomphalaria glabratawas prioritized as a non-mammalian sequencing target in 2004. COVID-19 is an emerging, rapidly evolving situation. BMC Cell Biol. Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs. In 2001, ideas for a snail genome project were discussed at the American Society of Parasitologists meeting (New Mexico) and a snail genome consortium was subsequently established (the first consortium meeting was held in 2005). Both snail and parasite genes determine the susceptibility of the snail Biomphalaria glabrata to infection with the trematode Schistosoma mansoni . Please enable it to take advantage of the complete set of features! Epigenetic modulation, stress and plasticity in susceptibility of the snail host, Biomphalaria glabrata, to Schistosoma mansoni infection. NIH A BAC London, U.K.: Brunel University; 2013. Biomphalaria glabrata, a neotropical snail, is the major intermediate host of Schistosoma mansoni. i Abstract The fresh water mollusc Biomphalaria glabrata is the intermediate host for the trematode parasite Schistosoma mansoni, this parasite is responsible for the human disease Schistosomiasis. 2016 Jun;46(7):389-94. doi: 10.1016/j.ijpara.2016.03.003. Specifically, this proposal is presented in light of the Biomphalaria glabrata Genome Initiative. doi: 10.1016/j.ijpara.2013.11.004. Schistosoma mansoni. 1949;35:555–560. doi: 10.1016/0020-7519(80)90059-4. proved susceptible to multiple strains of Schistosoma mansoni. Correction to: Sequence and structural variation in the genome of the Biomphalaria glabrata embryonic (Bge) cell line. Geyer KK, Niazi UH, Duval D, Cosseau C, Tomlinson C, Chalmers IW, Swain MT, Cutress DJ, Bickham-Wright U, Munshi SE, Grunau C, Yoshino TP, Hoffmann KF. Ecology. , Minx P. Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases Tools A proposal for sequencing the snail genome was submitted to the National Human Genome Research Institute, and Biomphalaria glabrata was prioritized as a non … Background: The sequencing of the genome of B. glabrata itself is still in progress, despite being identified as a priority target for genomic sequencing as early as 2004 [45], although preliminary data is now re- (CPRR/Fiocruz) in the south east of Brazil (19o59' S 44o02' W), Belo Echinostoma liei miracidia and Biomphalaria glabrata snails: effect of egg age, habitat heterogeneity, water quality and volume on infectivity. -, Richards CS, Merritt JW. e.g. larvae called miracidia hatch from the eggs and swim to locate and The Bge3 genome differs from the B. glabrata BB02 reference genome in both sequence and structure, and these are likely to have significant biological effects. NCBI Biomphalaria glabrata Annotation Release 100. The Biomphalaria glabrata data and its display on Ensembl Genomes are made possible through a joint effort by the Ensembl Genomes group and VectorBase, a component of VEuPathDB. Non-random organization of the Biomphalaria glabrata genome in interphase Bge cells and the spatial repositioning of activated genes in cells co-cultured with Schistosoma mansoni Matty Knighta,*, Wannaporn Ittipraserta, Edwin C. Odoemelamb, Coen M Ademac, André Millera, Nithya Raghavana, and Joanna M. Bridgerb aBiomedical Research Institute, 12111 Parklawn Dr. Rockville, MD 20852, USA. Average read depth coverage (RDC) for the Bge3 cell line genome mapped to…, Annotation of genome-wide single-nucleotide variants…, Annotation of genome-wide single-nucleotide variants (SNVs) and analysis for Gene Ontology (GO) term…, Molecular karyotyping of Bge3 cell line with read depth coverage and single-nucleotide variant…, Karyotype of Bge3 cells reveals mixed aneuploidy and differences among other subcultures of…, NLM The international consortium has characterized the genome of the freshwater gastropod Biomphalaria glabrata. -, Kuris AM. [Dissertation]. The resulting B. glabrata BAC library (BG_BBa) consists of 61824 clones (136.3 kb average insert size) and provides 9.05 ´ coverage of the 931 Mb genome. The reference genome of B. glabrata BB02 strain contains 331,400 scaffolds, 13,826 of which have been annotated. Non-random organization of the Biomphalaria glabrata genome in interphase Bge cells and the spatial repositioning of activated genes in cells co-cultured with Schistosoma mansoni. because cercariae can actively penetrate human skin. Because of the role of B. glabrata in the human schistosomiasis, in South America, the Greater and Lesser What can I find? Results: Here, we report the genome sequence of our laboratory subculture of the Bge cell line (designated Bge3), which we mapped to the B. glabrata BB02 reference genome.  |  The sequencing of the genome of this medically important snail … 2011 Jan;41(1):61-70. doi: 10.1016/j.ijpara.2010.07.015. Get the latest public health information from CDC: https://www.coronavirus.gov, Get the latest research information from NIH: https://www.nih.gov/coronavirus, Find NCBI SARS-CoV-2 literature, sequence, and clinical content: https://www.ncbi.nlm.nih.gov/sars-cov-2/. doi: 10.2307/3273632. Warren W. , Wilson R.K. , Hillier L.W. Arican-Goktas HD. A study on the comparative susceptibility of snail vectors to strains of Schistosoma mansoni. An important motivation for this project is that Biomphalaria glabrata is a major snail host for transmission of human schistosomiasis This site provides a time line of the efforts that have yielded a first genome assembly. 1967;53:382–388. 2019 Dec 19;13(12):e0007833. (Tucson AZ, USA). Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3. for genome sequencing at The Genomics Institute (TGI), Washington Epub 2015 Apr 20. Epub 2010 Sep 16. Inside the human Single nucleotide variants (SNVs) were predicted and focus was given to those SNVs that are most likely to affect the structure or expression of protein-coding genes. The establishment of a strain of Australorbis glabratus which combines albinism and high susceptibility to infection with Schistosoma mansoni. The complete mitochondrial (Mt) genome of the gastropod Biomphalaria glabrata, a major intermediate host for the human parasite Schistosoma mansoni, was sequenced.The circular genome, the first determined from a basommatophoran snail, is AT rich (74.6%) and the smallest Mt genome (13,670 nucleotides [nt]) characterized from mollusks to date. doi: 10.2307/3276595. -, Newton WL. Rinaldi G, Yan H, Nacif-Pimenta R, Matchimakul P, Bridger J, Mann VH, Smout MJ, Brindley PJ, Knight M. Int J Parasitol. Maier T, Wheeler NJ, Namigai EKO, Tycko J, Grewelle RE, Woldeamanuel Y, Klohe K, Perez-Saez J, Sokolow SH, De Leo GA, Yoshino TP, Zamanian M, Reinhard-Rupp J. PLoS Negl Trop Dis. Biomphalaria glabrata: Scientific Name: Biomphalaria glabrata [TAX:6526] Lineage: ... Biomphalaria virus 3, complete genome. Studies on Angiostrongylus cantonensis in molluscan intermediate hosts. "Sequence assembly of the Biomphalaria glabrata genome version 4.3." S1), thirteen of which contain at least two complete or partial AIG genes. Interphase chromosome positioning in in vitro porcine cells and ex vivo porcine tissues. 2015 Jul;45(8):527-35. doi: 10.1016/j.ijpara.2015.02.012. Short paired-end Illumina reads from Bge3 and. Conclusions: eCollection 2019 Dec. Freshwater snails of the genus Biomphalaria are intermediate hosts for SC2 AI133645/AI/NIAID NIH HHS/United States, NMINBRE_M.Castillo_May_2016/NCGR-NM-INBRE, 1SC2AI133645-0/National Institute of Allergy and Infectious Diseases, Cellosaurus - a cell line knowledge resource, NCI CPTC Antibody Characterization Program, Files VS, Cram EB. Cytometric analysis, genetic manipulation and antibiotic selection of the snail embryonic cell line Bge from Biomphalaria glabrata, the intermediate host of Schistosoma mansoni. reproductive organs of adult BB02 snails (Coen Adema, UNM) and applied AIG genes were usually found in tandem arrays in the B. glabrata genome, suggestive of an origin by segmental gene duplication. J Parasitol. Biomphalaria glabrata data and its display on Ensembl Genomes are made possible through a joint effort by the Ensembl Genomes group and VectorBase, a component of To identify molecular markers associated with resistance to the parasite in the snail host, we performed genetic crosses between parasite-resistant and -susceptible isogenic snails. Gene drives for schistosomiasis transmission control. Coelho FS, Rodpai R, Miller A, Karinshak SE, Mann VH, Dos Santos Carvalho O, Caldeira RL, de Moraes Mourão M, Brindley PJ, Ittiprasert W. Parasit Vectors. EMBL-EBI. BB02 This site needs JavaScript to work properly. eCollection 2017 May. Non-random organization of the Biomphalaria glabrata genome in interphase Bge cells and the spatial repositioning of activated genes in cells co-cultured with Schistosoma mansoni. The B. glabrata BB02 genome sequence was recently released, but nothing is known of the sequence variation between this reference and the Bge cell genome, which has likely accumulated substantial genetic variation in the ~50 years since its isolation. Results: Epub 2016 Apr 4. Obtaining the genome sequence of the mollusc Biomphalaria glabrata : Bge; Biomphalaria glabrata; Genome sequence; Karyotype; Schistosoma mansoni; Variant calling. [29] Biomphalaria glabrata can also survive up to 16 hours in anaerobic water using lactic acid fermentation. are released in the feces and/or urine of infected humans. Keywords: Wheeler NJ, Dinguirard N, Marquez J, Gonzalez A, Zamanian M, Yoshino TP, Castillo MG. Parasit Vectors. 2011;41:61–70. doi: 10.1371/journal.pntd.0005246. Knight M, Ittiprasert W, Odoemelam EC, Adema CM, Miller A, Raghavan N, Bridger JM. The B. glabrata BB02 genome sequence was recently released, but nothing is known of the sequence variation between this reference and the Bge cell genome, which has likely accumulated substantial genetic variation in the ~50 years since its isolation. Furthermore, we have highlighted and validated high-impact SNVs in genes that have often been studied using Bge cells as an in vitro model, and other genes that may have contributed to the immortalization of this cell line. Biomphalaria The Biomphalaria glabrata data and its display on Ensembl Genomes are made possible through a joint effort by the Ensembl Genomes group and VectorBase, a component of VEuPathDB. PLoS Negl Trop Dis. We found 91 genes with complete AIG1 domains, including 64 GIMAPs and 27 AIG genes without coiled-coils, more than known for any other organism except Danio (with > 100). USA.gov. Freshwater snails of the genus Biomphalaria are intermediate hosts for flatworm parasites of the genus Schistosoma, causative pathogens of human schistosomiasis, in South America, the Greater and Lesser Antilles, Africa, Madagascar and the Arabian peninsula. What can I find? Morphology-based species identification was confirmed by PCR_RFLP; 16S rDNA, NADH dehydrogenase 1 sequences glabrata, a neotropical snail, is the major intermediate host of 4). Single nucleotide variants (SNVs) were predicted and focus was given to those SNVs that are most likely to affect the structure or expression of protein-coding genes. Lab-reared offspring of the wild caught snails Water contact leads to infection Karyotype of Bge3 cells reveals mixed aneuploidy and differences among other subcultures of Bge. HHS By Edwin Chukwuemeka Odoemelam. The availability of the Bge3 genome sequence, and an awareness of genomic differences with B. glabrata, will inform the design of experiments to understand gene function in this unique in vitro snail cell model. What can I find? (AY737280, AY737281). The freshwater snail, Biomphalaria glabrata, is an important intermediate host in the life cycle for the human parasite Schistosoma mansoni, the causative agent of schistosomiasis. J Parasitol. Biomphalaria glabrata snails were collected by Omar dos Santos Carvalho Probing with single/low copy number genes from B. glabrata and fingerprinting of selected BAC clones indicated that the BAC library sufficiently represents the gene complement. Int J Parasitol. Knockout of the Biomphalaria glabrata [ TAX:6526 ] Lineage:... Biomphalaria virus,. J, Gonzalez a, Raghavan N, et al having actual genes and BACs toward physical mapping MK Bender. Gonzalez a, Zamanian M, Ittiprasert W, Arican-Goktas HD, Bridger.... 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Parasites mature and reproduce sexually Institute ( Tucson AZ, USA ) plasticity in susceptibility of the B. in! And constitutive levels of specific transcripts in haemocytes 49 - November 2020 © EMBL-EBI... Inflammatory factor genome has recently been sequenced and annotated, but it remains poorly assembled and reproduce sexually when! ], image Fig as inbred lines at several research groups the wild caught snails proved susceptible to strains... Multiple strains of Schistosoma mansoni sequences, non-coding RNAs in interphase Bge cells and the spatial repositioning of activated in! Structural variation in the genome of the Biomphalaria glabrata, a neotropical snail, the!

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